ISEC-Coimbra HPC cluster (Cirrus-C) CentOS 7 - /usr/global/Modules/3.2.10/modulefiles. INCD-Minho HPC and HTC cluster (Cirrus-B) CentOS 7 - /etc/modulefiles/LIP.

cvmfs/sw.el6/modules/RNA -īedtools-2.26.0 cufflinks-2.2.1 kallisto-0.43.0 start-2.5.2bīlat-36.2 fastqc-0.11.5 macs-1.4.2 tophat-2.1.1īowtie2-2.2.4 hisat2-2.0.5 samtools-1.3.1 trimmomatic-0.33īowtie2-2.3.0 homer-4.8 sicer-1.1 weblog-2.8.2īesides conventional login using SSH, the cirrus-A computing resources can be accessed via middleware using the Unified Middleware Distribution through the EGI and IBERGRID distributed computing infrastructures. cvmfs/sw.el7/modules/soft -Ĭlang/openmpi/4.0.1-test intel/swan/41.31ĬentOS 6 - /cvmfs/sw.el6/modules/soft. Execution of user defined software environments (operating system and libraries) using Linux containers in the HPC and HTC clusters with uDocker and Singularity is also supported. Users can also install software on their own for further information see the section on User Software Installation. To request the installation of additional software contact the INCD support helpdesk.

List of software centrally available via the modules tool at the INCD Cirrus HPC and HTC clusters as of March 2020.

Matlab r2012b fortran compiler